Engineer turned computational biologist, educator

Nicole Rockweiler, PhD

About

Hi! I’m a postdoctoral associate in Steven McCarroll’s lab at Harvard Medical School and the Broad Institute of MIT and Harvard. I’m interested in understanding the causes and consequences of mosaicism in health and disease.

I received a BS in biomedical engineering and mathematics from Washington University in St. Louis. After undergrad, I worked for three years as a bioinformatician at the Genome Technology Access Center, a next generation sequencing core at Washington University School of Medicine. My field experience at GTAC made me realize that I craved a career in computational genomics. I next went on to earn a PhD in computational and systems biology from Washington University School of Medicine in St. Louis. My PhD was on The Origins & Functional Effects of Postzygotic Mutations Throughout the Human Lifespan and was advised by Don Conrad and Barak Cohen.

I am passionate about teaching and aspire to become a professor at a primarily undergraduate institution.

My CV is available here.

Research projects

Click a panel to learn more.

Publications

Mosaicism

  • N. B. Rockweiler, A. Ramu, L. Nagirnaja, W. H. Wong, M. J. Michiel, C. W. Drubin, N. Huang, B. Miller, E. Z. Todres, K. A. Vigh-Conrad, A. Zito, K. S. Small, K. G. Ardlie, B. A. Cohen, D. F. Conrad, The origins and functional effects of postzygotic mutations throughout the human life span. Science. 380 (2023). [doi: 10.1126/science.abn7113] [pmid: 37053313] [PDF] [preprint] [altmetric]

Epigenomics

  • J. Zhou, R. L. Sears, X. Xing, B. Zhang, D. Li, N. B. Rockweiler, H. S. Jang, M. N. K. Choudhary, H. J. Lee, R. F. Lowdon, J. Arand, B. Tabers, C. C. Gu, T. J. Cicero, T. Wang, Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation. BMC Genomics. 18, 724 (2017). [doi: 10.1186/s12864-017-4115-6] [pmid: 28899353] [PDF]
  • S. Sankar, D. Yellajoshyula, B. Zhang, B. Teets, N. B. Rockweiler, K. L. Kroll, Gene regulatory networks in neural cell fate acquisition from genome-wide chromatin association of Geminin and Zic1. Sci Rep. 6, 37412 (2016). [doi: 10.1038/srep37412] [pmid: 27881878] [PDF]
  • X. Zhou, D. Li, B. Zhang, R. F. Lowdon, N. B. Rockweiler, R. L. Sears, P. a F. Madden, I. Smirnov, J. F. Costello, T. Wang, Epigenomic annotation of genetic variants using the Roadmap Epigenome Browser. Nat Biotechnol. 33, 345–346 (2015). [doi: 10.1038/nbt.3158] [pmid: 25690851] [PDF]
  • Roadmap Epigenomics Consortium, Integrative analysis of 111 reference human epigenomes. Nature. 518, 317–330 (2015). [doi: 10.1038/nature14248"] [pmid: 25693563] [PDF]

Other

  • E. Mahyari, J. Guo, A. C. Lima, D. P. Lewinsohn, A. M. Stendahl, K. A. Vigh-Conrad, X. Nie, L. Nagirnaja, N. B. Rockweiler, D. T. Carrell, J. M. Hotaling, K. I. Aston, D. F. Conrad, Comparative single-cell analysis of biopsies clarifies pathogenic mechanisms in Klinefelter syndrome. Am J Hum Genet. 108, 1924–1945 (2021). [doi: 10.1016/j.ajhg.2021.09.001] [pmid: 34626582] [PDF]
  • C. M. Taylor, N. B. Rockweiler, C. Liu, L. Rikimaru, A.-K. Tunemalm, O. G. Kisselev, G. R. Marshall, Using ligand-based virtual screening to allosterically stabilize the activated state of a GPCR. Chem Biol Drug Des. 75, 325–32 (2010). [doi.org/10.1111/j.1747-0285.2009.00944.x] [pmid: 20659113] [PDF]
  • S. M. Kennedy, Z. Ji, N. B. Rockweiler, A. R. Hahn, J. H. Booske, S. C. Hagness, The Role of Plasmalemmal-Cortical Anchoring on the Stability of Transmembrane Electropores. IEEE Trans Dielectr Electr Insul. 16, 1251–1258 (2009). [doi: 10.1109/TDEI.2009.5293935] [pmid: 20490371] [PDF]

Teaching

Philosophy

Through my years as an educator, I have followed three simple teaching principles to improve the experience and results of students’ learning journeys: 1) provide students with structured and guided time so that they can improve; 2) reflect on my teaching so that I can improve; and 3) inspire students to pursue STEM careers so that we can improve our future.

Experience

A selection of my teaching experience is below. Please see my CV for additional details and experience.

Teaching

  • Designed and taught a scientific communication and graduate school preparation 9-week course for underrepresented minorities through the Opportunities in Genomics Research program at the McDonnell Genome Institute at Washington University School of Medicine in St. Louis.
  • Designed and taught a 3-day bioinformatics minicourse for graduate students and medical researchers at Washington University School of Medicine in St. Louis. The minicourse has been expanded to a full semester course for all first year graduate students in the Division of Biology and biomedical Sciences at Washington University School of Medicine.
  • Teaching assistant for 6 semesters of undergraduate and graduate courses in biology, biostatistics, and computational biology at Washington University in St. Louis.

Training

  • Completed the Teaching Citation from the Center for Teaching and Learning at Washington University in St. Louis. Requirements for the program included TAing 3 courses, attending advanced pedagogy workshops, and completing a minicourse on developing a teaching philosophy statement.
  • Completed the Course Design Institute program at the Center for Teaching and Learning at Washington University in St. Louis. Each participant designed a college-level course over the multi-week program.
  • Completed the Research Mentoring Training program through the Center for the Improvement of Mentored Experiences in Research (CIMER)

Mentoring

  • Mentored high school and undergraduate students on independent computational projects.
  • Consultant for graduate coursework and scientific computing workshops at Washington University School of Medicine in St. Louis.

Contact

Have a question or a comment? Interested in collaborating or have a teaching opportunity? Reach out to me at nrockweiler@gmail.com.